gromacs package
=====================

Submodules
------------


gromacs.editconf module
---------------------------

.. automodule:: gromacs.editconf
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.genion module
------------------------------

.. automodule:: gromacs.genion
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.genrestr module
--------------------------

.. automodule:: gromacs.genrestr
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.grompp module
---------------------------

.. automodule:: gromacs.grompp
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.grompp_mdrun module
-----------------------------

.. automodule:: gromacs.grompp_mdrun
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.make_ndx module
------------------------------

.. automodule:: gromacs.make_ndx
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.gmxselect module
------------------------------

.. automodule:: gromacs.gmxselect
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.mdrun module
----------------------

.. automodule:: gromacs.mdrun
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.mdrun_plumed module
----------------------------

.. automodule:: gromacs.mdrun_plumed
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.pdb2gmx module
---------------------------

.. automodule:: gromacs.pdb2gmx
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.solvate module
------------------------------

.. automodule:: gromacs.solvate
    :members:
    :undoc-members:
    :show-inheritance:

gromacs.trjcat module
------------------------------

.. automodule:: gromacs.trjcat
    :members:
    :undoc-members:
    :show-inheritance: