biobb_gromacs

• gromacs package
  • Submodules
  • gromacs.editconf module
    • Editconf
      • Editconf.launch()
    • editconf()
  • gromacs.genion module
    • Genion
      • Genion.launch()
    • genion()
  • gromacs.genrestr module
    • Genrestr
      • Genrestr.launch()
    • genrestr()
  • gromacs.grompp module
    • Grompp
      • Grompp.launch()
    • grompp()
  • gromacs.grompp_mdrun module
    • GromppMdrun
      • GromppMdrun.launch()
    • grompp_mdrun()
  • gromacs.make_ndx module
    • MakeNdx
      • MakeNdx.launch()
    • make_ndx()
  • gromacs.gmxselect module
    • Gmxselect
      • Gmxselect.launch()
    • gmxselect()
  • gromacs.mdrun module
    • Mdrun
      • Mdrun.copy_to_host()
      • Mdrun.launch()
    • mdrun()
  • gromacs.mdrun_plumed module
    • MdrunPlumed
      • MdrunPlumed.copy_to_host()
      • MdrunPlumed.launch()
      • MdrunPlumed.stage_files()
    • mdrun_plumed()
  • gromacs.pdb2gmx module
    • Pdb2gmx
      • Pdb2gmx.check_lengths()
      • Pdb2gmx.find_length()
      • Pdb2gmx.launch()
    • pdb2gmx()
  • gromacs.solvate module
    • Solvate
      • Solvate.launch()
    • solvate()
  • gromacs.trjcat module
    • Trjcat
      • Trjcat.launch()
    • trjcat()
• gromacs_extra package
  • Submodules
  • gromacs_extra.ndx2resttop module
    • Ndx2resttop
      • Ndx2resttop.launch()
    • ndx2resttop()
  • gromacs_extra.append_ligand module
    • AppendLigand
      • AppendLigand.launch()
    • append_ligand()